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제목 (2018-4)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-04-01
조회수 717
  2018년 4월
  Newsletter
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안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

벚꽃 소풍이 기다려지는 4월입니다. 미세먼지 주의하시고 화창한 날이 많은 4월이길 기대해 봅니다. ^^

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최신 논문 (RNA-Seq & Microarray 분야)

1. Burden-driven feedback control of gene expression.
Ceroni F, Boo A, Furini S, Gorochowski TE, Borkowski O, Ladak YN, Awan AR, Gilbert C, Stan GB, Ellis T. Nat Methods. 2018 Mar 26. doi: 10.1038/nmeth.4635.

2. Systematic Characterization of Stress-Induced RNA Granulation.
Namkoong S, Ho A, Woo YM, Kwak H, Lee JH. Mol Cell. 2018 Mar 7. pii: S1097-2765(18)30144-8. doi: 10.1016/j.molcel.2018.02.025.

3. Continuous Variation within Cell Types of the Nervous System.
Cembrowski MS, Menon V. Trends Neurosci. 2018 Mar 22. pii: S0166-2236(18)30059-6. doi: 10.1016/j.tins.2018.02.010.

4. Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis.
Sarin S, Zuniga-Sanchez E, Kurmangaliyev YZ, Cousins H, Patel M, Hernandez J, Zhang KX, Samuel MA, Morey M, Sanes JR, Zipursky SL. Neuron. 2018 Mar 19. pii: S0896-6273(18)30181-8. doi: 10.1016/j.neuron.2018.03.004.

5. SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions.
Trincado JL, Entizne JC, Hysenaj G, Singh B, Skalic M, Elliott DJ, Eyras E. Genome Biol. 2018 Mar 23;19(1):40. doi: 10.1186/s13059-018-1417-1.

6. BEARscc determines robustness of single-cell clusters using simulated technical replicates.
Severson DT, Owen RP, White MJ, Lu X, Schuster-Bockler B. Nat Commun. 2018 Mar 22;9(1):1187. doi: 10.1038/s41467-018-03608-y.

7. Promoter architecture determines cotranslational regulation of mRNA.
Espinar L, Schikora Tamarit MA, Domingo J, Carey LB. Genome Res. 2018 Mar 22. doi: 10.1101/gr.230458.117.

8. Loss of NF-κB1 Causes Gastric Cancer with Aberrant Inflammation and Expression of Immune Checkpoint Regulators in a STAT-1-Dependent Manner.
O'Reilly LA, Putoczki TL, Mielke LA, Low JT, Lin A, Preaudet A, Herold MJ, Yaprianto K, Tai L, Kueh A, Pacini G, Ferrero RL, Gugasyan R, Hu Y, Christie M, Wilcox S, Grumont R, Griffin MDW, O'Connor L, Smyth GK, Ernst M, Waring P, Gerondakis S, Strasser A. Immunity. 2018 Mar 20;48(3):570-583.e8. doi: 10.1016/j.immuni.2018.03.003.

9. Identification of spatial expression trends in single-cell gene expression data.
Edsgard D, Johnsson P, Sandberg R. Nat Methods. 2018 Mar 19. doi: 10.1038/nmeth.4634.

10. Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma.
Merk DJ, Ohli J, Merk ND, Thatikonda V, Morrissy S, Schoof M, Schmid SN, Harrison L, Filser S, Ahlfeld J, Erkek S, Raithatha K, Andreska T, Weißhaar M, Launspach M, Neumann JE, Shakarami M, Plenker D, Marra MA, Li Y, Mungall AJ, Moore RA, Ma Y, Jones SJM, Lutz B, Ertl-Wagner B, Rossi A, Wagener R, Siebert R, Jung A, Eberhart CG, Lach B, Sendtner M, Pfister SM, Taylor MD, Chavez L, Kool M, Schuller U. Dev Cell. 2018 Mar 9. pii: S1534-5807(18)30107-2. doi: 10.1016/j.devcel.2018.02.012.

11. Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq.
Cole C, Byrne A, Beaudin AE, Forsberg EC, Vollmers C. Nucleic Acids Res. 2018 Mar 14. doi: 10.1093/nar/gky182.

12. SEASTAR: systematic evaluation of alternative transcription start sites in RNA.
Qin Z, Stoilov P, Zhang X, Xing Y. Nucleic Acids Res. 2018 Mar 13. doi: 10.1093/nar/gky053.

13. The multifunctional solute carrier 3A2 (SLC3A2) confers a poor prognosis in the highly proliferative breast cancer subtypes.
El Ansari R, Craze ML, Diez-Rodriguez M, Nolan CC, Ellis IO, Rakha EA, Green AR. Br J Cancer. 2018 Mar 16. doi: 10.1038/s41416-018-0038-5.

14. Molecular transitions in early progenitors during human cord blood hematopoiesis.
Zheng S, Papalexi E, Butler A, Stephenson W, Satija R. Mol Syst Biol. 2018 Mar 15;14(3):e8041. doi: 10.15252/msb.20178041.

15. Multiplexed Real-Time NMR GTPase Assay for Simultaneous Monitoring of Multiple Guanine Nucleotide Exchange Factor Activities from Human Cancer Cells and Organoids.
Gebregiworgis T, Marshall CB, Nishikawa T, Radulovich N, Sandi MJ, Fang Z, Rottapel R, Tsao MS, Ikura M. J Am Chem Soc. 2018 Mar 22. doi: 10.1021/jacs.7b13703.

16. Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis.
Dong J, Hu Y, Fan X, Wu X, Mao Y, Hu B, Guo H, Wen L, Tang F. Genome Biol. 2018 Mar 14;19(1):31. doi: 10.1186/s13059-018-1416-2.

17. A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.
Zhong S, Zhang S, Fan X, Wu Q, Yan L, Dong J, Zhang H, Li L, Sun L, Pan N, Xu X, Tang F, Zhang J, Qiao J, Wang X. Nature. 2018 Mar 22;555(7697):524-528. doi: 10.1038/nature25980. Epub 2018 Mar 14.

18. Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.
Angeles-Albores D, Puckett Robinson C, Williams BA, Wold BJ, Sternberg PW. Proc Natl Acad Sci U S A. 2018 Mar 12. pii: 201712387. doi: 10.1073/pnas.1712387115.

19. Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads.
Sasagawa Y, Danno H, Takada H, Ebisawa M, Tanaka K, Hayashi T, Kurisaki A, Nikaido I. Genome Biol. 2018 Mar 9;19(1):29. doi: 10.1186/s13059-018-1407-3.

20. An accurate and robust imputation method scImpute for single-cell RNA-seq data.
Li WV, Li JJ. Nat Commun. 2018 Mar 8;9(1):997. doi: 10.1038/s41467-018-03405-7.

21. CXCL1-CXCR2 axis mediates angiotensin II-induced cardiac hypertrophy and remodelling through regulation of monocyte infiltration.
Wang L, Zhang YL, Lin QY, Liu Y, Guan XM, Ma XL, Cao HJ, Liu Y, Bai J, Xia YL, Du J, Li HH. Eur Heart J. 2018 Mar 5. doi: 10.1093/eurheartj/ehy085.

22. Improving the value of public RNA-seq expression data by phenotype prediction.
Ellis SE, Collado-Torres L, Jaffe A, Leek JT. Nucleic Acids Res. 2018 Mar 5. doi: 10.1093/nar/gky102.

23. Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis.
Ibrahim F, Maragkakis M, Alexiou P, Mourelatos Z. Nat Struct Mol Biol. 2018 Mar 5. doi: 10.1038/s41594-018-0042-8.

24. Single-molecule analysis of phospholipid scrambling by TMEM16F.
Watanabe R, Sakuragi T, Noji H, Nagata S. Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3066-3071. doi: 10.1073/pnas.1717956115. Epub 2018 Mar 5.

25. Native RNA-Sequencing Throws its Hat into the Transcriptomics Ring.
Hussain S. Trends Biochem Sci. 2018 Mar 1. pii: S0968-0004(18)30028-8. doi: 10.1016/j.tibs.2018.02.007.

26. Single-Cell RNA-Seq of Mouse Dopaminergic Neurons Informs Candidate Gene Selection for Sporadic Parkinson Disease.
Hook PW, McClymont SA, Cannon GH, Law WD, Morton AJ, Goff LA, McCallion AS. Am J Hum Genet. 2018 Mar 1;102(3):427-446. doi: 10.1016/j.ajhg.2018.02.001.

27. Exponential scaling of single-cell RNA-seq in the past decade.
Svensson V, Vento-Tormo R, Teichmann SA. Nat Protoc. 2018 Apr;13(4):599-604. doi: 10.1038/nprot.2017.149. Epub 2018 Mar 1.

28. O-GlcNAc Transferase Recognizes Protein Substrates Using an Asparagine Ladder in the Tetratricopeptide Repeat (TPR) Superhelix.
Levine ZG, Fan C, Melicher MS, Orman M, Benjamin T, Walker S. J Am Chem Soc. 2018 Mar 14;140(10):3510-3513. doi: 10.1021/jacs.7b13546. Epub 2018 Mar 5.

29. Immune Activation and Benefit From Avelumab in EBV-Positive Gastric Cancer.
Panda A, Mehnert JM, Hirshfield KM, Riedlinger G, Damare S, Saunders T, Kane M, Sokol L, Stein MN, Poplin E, Rodriguez-Rodriguez L, Silk AW, Aisner J, Chan N, Malhotra J, Frankel M, Kaufman HL, Ali S, Ross JS, White EP, Bhanot G, Ganesan S. J Natl Cancer Inst. 2018 Mar 1;110(3):316-320. doi: 10.1093/jnci/djx213.

30. A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons.
Sodersten E, Toskas K, Rraklli V, Tiklova K, Bjorklund AK, Ringner M, Perlmann T, Holmberg J. Nat Commun. 2018 Mar 26;9(1):1226. doi: 10.1038/s41467-018-03538-9.

31. Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites.
Reid AJ, Talman AM, Bennett HM, Gomes AR, Sanders MJ, Illingworth CJR, Billker O, Berriman M, Lawniczak MK. Elife. 2018 Mar 27;7. pii: e33105. doi: 10.7554/eLife.33105.

32. Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis.
Xie T, Wang Y, Deng N, Huang G, Taghavifar F, Geng Y, Liu N, Kulur V, Yao C, Chen P, Liu Z, Stripp B, Tang J, Liang J, Noble PW, Jiang D. Cell Rep. 2018 Mar 27;22(13):3625-3640. doi: 10.1016/j.celrep.2018.03.010.

최신 바이오 뉴스
1. 유전체 빅데이터로 질병 유전자 80% 예측…신약 개발 비용·시간 확 줄인다
2. 개불의 모든 것 한눈에...발생 단계별 유전체 지도 완성
3. 암 개인맞춤 치료 시대 올까?
4. KAIST, 소유욕 만드는 뇌 신경회로 발견
5. 인간 학습능력 설명하는 새 이론 70년만에 나왔다
6. 부모 보살핌, 신생아 DNA에 영향 미친다… 동물실험 입증
7. 자폐증 일으키는 유전자 ‘삼돌이’ 확인
8. 값비싼 ‘홉’ 없이, 유전자 가위로 수제맥주 만든다
9. ‘단세포 인공생명체’ 눈앞에 성큼
10. 놀라운 바퀴의 생존 비결, 유전자에 있었네
11. 우리가 먹는 약, 장내미생물에 위협?
12. 곰팡이 호흡기 감염 막는 면역 작용 찾았다
13. 곰팡이 호흡기 감염 막는 면역 작용 찾았다
14. 현생 인류, 이웃 종 데니소바인과 적어도 2번 교배했다
15. 5억 년 전 고대생물 뇌 구조, 국내 연구진이 밝혔다
16. 의학 난제 해결할 '동물 어벤저스' 뜰까
17. 체외 인간 난자 배양 세계 첫 성공
18. 피부 노화, 3차원으로 관찰할 수 있다!
19. 공감능력 떨어지는 건 유전자 탓?
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
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