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제목 (2018-3)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2018-03-02
조회수 494
  2018년 3월
  Newsletter
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안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

겨울이 가고 봄을 재촉하는 삼월입니다. 남아있는 추위는 운동으로 이겨내시길 바라고 감기 조심하세요.^^

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ExDEGA 업데이트(v.1.6.0) 공지 및
샘플데이터
최신 논문 (RNA-Seq & Microarray 분야)

1. Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.
Stephenson W, Donlin LT, Butler A, Rozo C, Bracken B, Rashidfarrokhi A, Goodman SM, Ivashkiv LB, Bykerk VP, Orange DE, Darnell RB, Swerdlow HP, Satija R. Nat Commun. 2018 Feb 23;9(1):791. doi: 10.1038/s41467-017-02659-x.

2. Mapping the Mouse Cell Atlas by Microwell-Seq.
Han X, Wang R, Zhou Y, Fei L, Sun H, Lai S, Saadatpour A, Zhou Z, Chen H, Ye F, Huang D, Xu Y, Huang W, Jiang M, Jiang X, Mao J, Chen Y, Lu C, Xie J, Fang Q, Wang Y, Yue R, Li T, Huang H, Orkin SH, Yuan GC, Chen M, Guo G. Cell. 2018 Feb 22;172(5):1091-1107.e17. doi: 10.1016/j.cell.2018.02.001.

3. Combined cistrome and transcriptome analysis of SKI in AML cells identifies SKI as a co-repressor for RUNX1.
Feld C, Sahu P, Frech M, Finkernagel F, Nist A, Stiewe T, Bauer UM, Neubauer A. Nucleic Acids Res. 2018 Feb 20. doi: 10.1093/nar/gky119.

4. Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior.
Sathyamurthy A, Johnson KR, Matson KJE, Dobrott CI, Li L, Ryba AR, Bergman TB, Kelly MC, Kelley MW, Levine AJ. Cell Rep. 2018 Feb 20;22(8):2216-2225. doi: 10.1016/j.celrep.2018.02.003.

5. Transcriptional Repressor HIC1 Contributes to Suppressive Function of Human Induced Regulatory T Cells.
Ubaid Ullah, Andrabi SBA, Tripathi SK, Dirasantha O, Kanduri K, Rautio S, Gross CC, Lehtimaki S, Bala K, Tuomisto J, Bhatia U, Chakroborty D, Elo LL, Lahdesmaki H, Wiendl H, Rasool O, Lahesmaa R. Cell Rep. 2018 Feb 20;22(8):2094-2106. doi: 10.1016/j.celrep.2018.01.070.

6. Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki.
Mazin PV, Shagimardanova E, Kozlova O, Cherkasov A, Sutormin R, Stepanova VV, Stupnikov A, Logacheva M, Penin A, Sogame Y, Cornette R, Tokumoto S, Miyata Y, Kikawada T, Gelfand MS, Gusev O. Proc Natl Acad Sci U S A. 2018 Feb 20. pii: 201719493. doi: 10.1073/pnas.1719493115.

7. Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate.
Wang Y, Tang Z, Huang H, Li J, Wang Z, Yu Y, Zhang C, Li J, Dai H, Wang F, Cai T, Tang N. Proc Natl Acad Sci U S A. 2018 Feb 20. pii: 201719474. doi: 10.1073/pnas.1719474115.

8. On the design of CRISPR-based single-cell molecular screens.
Hill AJ, McFaline-Figueroa JL, Starita LM, Gasperini MJ, Matreyek KA, Packer J, Jackson D, Shendure J, Trapnell C. Nat Methods. 2018 Feb 19. doi: 10.1038/nmeth.4604.

9. LLM-domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
Bastakis E, Hedtke B, Klermund C, Grimm B, Schwechheimer C. Plant Cell. 2018 Feb 16. pii: tpc.00947.2017. doi: 10.1105/tpc.17.00947.

10. Single-cell transcriptional dynamics of flavivirus infection.
Zanini F, Pu SY, Bekerman E, Einav S, Quake SR. Elife. 2018 Feb 16;7. pii: e32942. doi: 10.7554/eLife.32942.

11. A human-specific switch of alternatively spliced AFMID isoforms contributes to TP53 mutations and tumor recurrence in hepatocellular carcinoma.
Lin KT, Ma WK, Scharner J, Liu YR, Krainer AR. Genome Res. 2018 Feb 15. doi: 10.1101/gr.227181.117.

12. Brca2, Pds5 and Wapl differentially control cohesin chromosome association and function.
Misulovin Z, Pherson M, Gause M, Dorsett D. PLoS Genet. 2018 Feb 15;14(2):e1007225. doi: 10.1371/journal.pgen.1007225.

13. Comprehensive characterisation of compartment-specific long non-coding RNAs associated with pancreatic ductal adenocarcinoma.
Arnes L, Liu Z, Wang J, Carlo Maurer H, Sagalovskiy I, Sanchez-Martin M, Bommakanti N, Garofalo DC, Balderes DA, Sussel L, Olive KP, Rabadan R. Gut. 2018 Feb 10. pii: gutjnl-2017-314353. doi: 10.1136/gutjnl-2017-314353.

14. IKKα is required in the intestinal epithelial cells for tumour stemness.
Colomer C, Margalef P, Gonzalez J, Vert A, Bigas A, Espinosa L. Br J Cancer. 2018 Feb 13. doi: 10.1038/bjc.2017.459.

15. GRF-interacting factor1 (gif1) Regulates Shoot Architecture and Meristem Determinacy in Maize.
Zhang D, Sun W, Singh R, Zheng Y, Cao Z, Li M, Lunde C, Hake S, Zhang Z. Plant Cell. 2018 Feb 5. pii: tpc.00791.2017. doi: 10.1105/tpc.17.00791.

16. Opaque11 Is a Central Hub of the Regulatory Network for Maize Endosperm Development and Nutrient Metabolism.
Feng F, Qi W, Lv Y, Yan S, Xu L, Yang W, Yuan Y, Chen Y, Zhao H, Song R. Plant Cell. 2018 Feb 7. pii: tpc.00616.2017. doi: 10.1105/tpc.17.00616.

17. SOX2 regulates common and specific stem cell features in the CNS and endoderm derived organs.
Hagey DW, Klum S, Kurtsdotter I, Zaouter C, Topcic D, Andersson O, Bergsland M, Muhr J. PLoS Genet. 2018 Feb 12;14(2):e1007224. doi: 10.1371/journal.pgen.1007224. eCollection 2018 Feb.

18. Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver.
Wang J, Symul L, Yeung J, Gobet C, Sobel J, Luck S, Westermark PO, Molina N, Naef F. Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1916-E1925. doi: 10.1073/pnas.1715225115. Epub 2018 Feb 5.

19. Epigenetic Dysregulation of the Drp1 Binding Partners MiD49 and MiD51 Increases Mitotic Mitochondrial Fission and Promotes Pulmonary Arterial Hypertension: Mechanistic and Therapeutic Implications.
Chen KH, Dasgupta A, Lin J, Potus F, Bonnet S, Iremonger J, Fu J, Mewburn J, Wu D, Dunham-Snary K, Theilmann AL, Jing ZC, Hindmarch C, Ormiston ML, Lawrie A, Archer SL. Circulation. 2018 Feb 5. pii: CIRCULATIONAHA.117.031258. doi: 10.1161/CIRCULATIONAHA.117.031258.

20. ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream of transcription start sites at the majority of CpG island promoters.
Rhie SK, Yao L, Luo Z, Witt H, Schreiner S, Guo Y, Perez AA, Farnham PJ. Genome Res. 2018 Feb 2. pii: gr.228809.117. doi: 10.1101/gr.228809.117.

21. Development and validation of a gene expression-based signature to predict distant metastasis in locoregionally advanced nasopharyngeal carcinoma: a retrospective, multicentre, cohort study.
Tang XR, Li YQ, Liang SB, Jiang W, Liu F, Ge WX, Tang LL, Mao YP, He QM, Yang XJ, Zhang Y, Wen X, Zhang J, Wang YQ, Zhang PP, Sun Y, Yun JP, Zeng J, Li L, Liu LZ, Liu N, Ma J. Lancet Oncol. 2018 Feb 7. pii: S1470-2045(18)30080-9. doi: 10.1016/S1470-2045(18)30080-9.

22. A printable hydrogel microarray for drug screening avoids false positives associated with promiscuous aggregating inhibitors.
Mateen R, Ali MM, Hoare T. Nat Commun. 2018 Feb 9;9(1):602. doi: 10.1038/s41467-018-02956-z.

23. Deciphering Cell Lineage Specification during Male Sex Determination with Single-Cell RNA Sequencing.
Stevant I, Neirijnck Y, Borel C, Escoffier J, Smith LB, Antonarakis SE, Dermitzakis ET, Nef S. Cell Rep. 2018 Feb 6;22(6):1589-1599. doi: 10.1016/j.celrep.2018.01.043.

24. Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity.
Stone WJR, Campo JJ, Ouedraogo AL, Meerstein-Kessel L, Morlais I, Da D, Cohuet A, Nsango S, Sutherland CJ, van de Vegte-Bolmer M, Siebelink-Stoter R, van Gemert GJ, Graumans W, Lanke K, Shandling AD, Pablo JV, Teng AA, Jones S, de Jong RM, Fabra-Garcia A, Bradley J, Roeffen W, Lasonder E, Gremo G, Schwarzer E, Janse CJ, Singh SK, Theisen M, Felgner P, Marti M, Drakeley C, Sauerwein R, Bousema T, Jore MM. Nat Commun. 2018 Feb 8;9(1):558. doi: 10.1038/s41467-017-02646-2.

25. SOD3 improves the tumor response to chemotherapy by stabilizing endothelial HIF-2α.
Mira E, Carmona-Rodriguez L, Perez-Villamil B, Casas J, Fernandez-Acenero MJ, Martinez-Rey D, Martin-Gonzalez P, Heras-Murillo I, Paz-Cabezas M, Tardaguila M, Oury TD, Martin-Puig S, Lacalle RA, Fabrias G, Diaz-Rubio E, Manes S. Nat Commun. 2018 Feb 8;9(1):575. doi: 10.1038/s41467-018-03079-1.

26. Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
Kim T, Seo HD, Hennighausen L, Lee D, Kang K. Nucleic Acids Res. 2018 Feb 6. doi: 10.1093/nar/gky083.

27. Gli3 is a negative regulator of Tas1r3-expressing taste cells.
Qin Y, Sukumaran SK, Jyotaki M, Redding K, Jiang P, Margolskee RF. PLoS Genet. 2018 Feb 7;14(2):e1007058. doi: 10.1371/journal.pgen.1007058. eCollection 2018 Feb.

28. Clonally expanded γδ T cells protect against Staphylococcus aureus skin reinfection.
Dillen CA, Pinsker BL, Marusina AI, Merleev AA, Farber ON, Liu H, Archer NK, Lee DB, Wang Y, Ortines RV, Lee SK, Marchitto MC, Cai SS, Ashbaugh AG, May LS, Holland SM, Freeman AF, Miller LG, Yeaman MR, Simon SI, Milner JD, Maverakis E, Miller LS. J Clin Invest. 2018 Feb 5. pii: 96481. doi: 10.1172/JCI96481.

29. Spatially resolved RNA-sequencing of the embryonic heart identifies a role for Wnt/β-catenin signaling in autonomic control of heart rate.
Burkhard SB, Bakkers J. Elife. 2018 Feb 5;7. pii: e31515. doi: 10.7554/eLife.31515.

30. Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control.
Hayashi M, Hinckley CA, Driscoll SP, Moore NJ, Levine AJ, Hilde KL, Sharma K, Pfaff SL. Neuron. 2018 Feb 21;97(4):869-884.e5. doi: 10.1016/j.neuron.2018.01.023. Epub 2018 Feb 1.

31. Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.
Caires-Junior LC, Goulart E, Melo US, Araujo BSH, Alvizi L, Soares-Schanoski A, de Oliveira DF, Kobayashi GS, Griesi-Oliveira K, Musso CM, Amaral MS, daSilva LF, Astray RM, Suarez-Patino SF, Ventini DC, Gomes da Silva S, Yamamoto GL, Ezquina S, Naslavsky MS, Telles-Silva KA, Weinmann K, van der Linden V, van der Linden H, de Oliveira JMR, Arrais NRM, Melo A, Figueiredo T, Santos S, Meira JCG, Passos SD, de Almeida RP, Bispo AJB, Cavalheiro EA, Kalil J, Cunha-Neto E, Nakaya H, Andreata-Santos R, de Souza Ferreira LC, Verjovski-Almeida S, Ho PL, Passos-Bueno MR, Zatz M. Nat Commun. 2018 Feb 2;9(1):475. doi: 10.1038/s41467-017-02790-9.

32. The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus.
Caballero CJ, Menendez-Gil P, Catalan-Moreno A, Vergara-Irigaray M, Garcia B, Segura V, Irurzun N, Villanueva M, Ruiz de Los Mozos I, Solano C, Lasa I, Toledo-Arana A. Nucleic Acids Res. 2018 Feb 16;46(3):1345-1361. doi: 10.1093/nar/gkx1284.

33. NRF2 regulates endothelial glycolysis and proliferation with miR-93 and mediates the effects of oxidized phospholipids on endothelial activation.
Kuosmanen SM, Kansanen E, Kaikkonen MU, Sihvola V, Pulkkinen K, Jyrkkanen HK, Tuoresmaki P, Hartikainen J, Hippelainen M, Kokki H, Tavi P, Heikkinen S, Levonen AL. Nucleic Acids Res. 2018 Feb 16;46(3):1124-1138. doi: 10.1093/nar/gkx1155.

34. Somatic Mutations and Splicing Variants of Focal Adhesion Kinase in Non-Small Cell Lung Cancer.
Zhou B, Wang GZ, Wen ZS, Zhou YC, Huang YC, Chen Y, Zhou GB. J Natl Cancer Inst. 2018 Feb 1;110(2). doi: 10.1093/jnci/djx157.

35. Ovarian Follicular Theca Cell Recruitment, Differentiation, and Impact on Fertility: 2017 Update.
Richards JS, Ren YA, Candelaria N, Adams JE, Rajkovic A. Endocr Rev. 2018 Feb 1;39(1):1-20. doi: 10.1210/er.2017-00164.

36. Characterization of clinically used oral antiseptics as quadruplex-binding ligands.
Calabrese DR, Zlotkowski K, Alden S, Hewitt WM, Connelly CM, Wilson RM, Gaikwad S, Chen L, Guha R, Thomas CJ, Mock BA, Schneekloth JS Jr. Nucleic Acids Res. 2018 Feb 22. doi: 10.1093/nar/gky084.

37. Bias, robustness and scalability in single-cell differential expression analysis.
Soneson C, Robinson MD. Nat Methods. 2018 Feb 26. doi: 10.1038/nmeth.4612.

38. In Vitro Culture, Drug Sensitivity, and Transcriptome of Plasmodium Vivax Hypnozoites.
Gural N, Mancio-Silva L, Miller AB, Galstian A, Butty VL, Levine SS, Patrapuvich R, Desai SP, Mikolajczak SA, Kappe SHI, Fleming HE, March S, Sattabongkot J, Bhatia SN. Cell Host Microbe. 2018 Feb 6. pii: S1931-3128(18)30037-4. doi: 10.1016/j.chom.2018.01.002.

39. Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.
Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4.

최신 바이오 뉴스
1. 기적의 알코올 중독 치료제, 바클로펜은 효과가 없다?
2. KIST, 암세포 증식 막는 새로운 세포분열 조절자 발견
3. “암세포 되기 전 퇴치” 종양줄기세포 찾아 없애는 물질 발견
4. 저개발국 쌀 문제 해결하는 '착한' 비료 나온다
5. 난자 생존력 키워 가임 기간 늘린다
6. '더러운 욕망' 억제 못 한다면...화학적 거세 후 몸에 생기는 일은?
7. 면역세포가 오히려 조직 파괴… KAIST, 방관자 면역세포의 인체 손상 원리 발견
8. 세계적 구조생물학자 김성호 UC버클리 교수 "게놈 해독 통해 한국인 암 연구하겠다"
9. 마시면 살빠진다는 케톤음료, 사실일까?
10. 섬유근육통, 왜 이렇게 아픈지 봤더니
11. 윤성빈 스켈레톤 금메달 안겨준 DNA 맞춤 과학훈련법
12. 냉동인간 기술 어디까지 왔나
13. 전 부칠 때 비상? “프라이팬 재료 비만 일으킬수도”
14. '미지근한' 온도는 뇌 어느 부분이 감지할까?...초정밀 자기장 측정기로 확인
15. 손바닥 만한 기계로 게놈 해독하는 나노포어 기술, 한 번에 더 긴 가닥 읽는다
16. 피부 줄기세포로 근육 만들어
17. “암세포 되기 전 퇴치” 종양줄기세포 찾아 없애는 물질 발견
18. 생명과학 연구 새 지평… 세포 속 액체의 점도확인 가능해졌다
19. ‘조직 재생’ 비밀 담긴 멕시코도롱뇽 DNA 염기서열 해독 성공
20. 타이레놀, 아스피린… 어떤 진통제 먹어야 안전할까
21. 지카 바이러스 소두증, 유전자 이상이 원인이었다
22. 피를 보면 암이 보인다! 암 조기검진 ‘액체생검’ 기술은 진화중
23. 간단한 소변 검사로 ‘얼마나 늙었는지’ 알 수 있다
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
#주요 서비스#
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service@e-biogen.com








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