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제목 (2017-9)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2017-09-01
조회수 101
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

더위가 많이 누그러져 야외활동 하기 좋은 9월입니다. 화창한 주말에 나들이 계획을 세워보시죠~^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

NGS(RNA-Seq/miRNA-Seq/ChIP-Seq/MBD-Seq) 서비스 할인행사!
세포/조직 이미지 분석 소프트웨어(SABIA) 업그레이드!(연 60만원)

1. Massively parallel single-nucleus RNA-seq with DroNc-seq.
Habib N, Avraham-Davidi I, Basu A, Burks T, Shekhar K, Hofree M, Choudhury SR, Aguet F, Gelfand E, Ardlie K, Weitz DA, Rozenblatt-Rosen O, Zhang F, Regev A. Nat Methods. 2017 Aug 28. doi: 10.1038/nmeth.4407.

2. New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics.
Baron M, Yanai I. Genome Biol. 2017 Aug 24;18(1):159. doi: 10.1186/s13059-017-1300-5.

3. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Hickman R, van Verk MC, Van Dijken AJH, Pereira Mendes M, Vroegop-Vos IA, Caarls L, Steenbergen M, Van Der Nagel I, Wesselink GJ, Jironkin A, Talbot A, Rhodes J, de Vries M, Schuurink RC, Denby K, Pieterse CMJ, Van Wees SCM. Plant Cell. 2017 Aug 21. pii: tpc.00958.2016. doi: 10.1105/tpc.16.00958.

4. Zika-Virus-Encoded NS2A Disrupts Mammalian Cortical Neurogenesis by Degrading Adherens Junction Proteins.
Yoon KJ, Song G, Qian X, Pan J, Xu D, Rho HS, Kim NS, Habela C, Zheng L, Jacob F, Zhang F, Lee EM, Huang WK, Ringeling FR, Vissers C, Li C, Yuan L, Kang K, Kim S, Yeo J, Cheng Y, Liu S, Wen Z, Qin CF, Wu Q, Christian KM, Tang H, Jin P, Xu Z, Qian J, Zhu H, Song H, Ming GL. Cell Stem Cell. 2017 Aug 16. pii: S1934-5909(17)30293-X. doi: 10.1016/j.stem.2017.07.014.

5. Extensive alternative splicing transitions during postnatal skeletal muscle development are required for calcium handling functions.
Brinegar AE, Xia Z, Loehr JA, Li W, Rodney GG, Cooper TA. Elife. 2017 Aug 11;6. pii: e27192. doi: 10.7554/eLife.27192.

6. p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics.
Hafner A, Stewart-Ornstein J, Purvis JE, Forrester WC, Bulyk ML, Lahav G. Nat Struct Mol Biol. 2017 Aug 21. doi: 10.1038/nsmb.3452.

7. A novel Drosophila injury model reveals severed axons are cleared through a Draper/MMP-1 signaling cascade.
Purice MD, Ray A, Munzel EJ, Pope BJ, Park DJ, Speese SD, Logan MA. Elife. 2017 Aug 21;6. pii: e23611. doi: 10.7554/eLife.23611.

8. Gavage of Fecal Samples From Patients with Colorectal Cancer Promotes Intestinal Carcinogenesis in Germ-free and Conventional Mice.
Wong SH, Zhao L, Zhang X, Nakatsu G, Han J, Xu W, Xiao X, Kwong TN, Tsoi H, Wu WK, Benhua Z, Chan FK, Sung JJ, Wei H, Yu J. Gastroenterology. 2017 Aug 17. pii: S0016-5085(17)36038-9. doi: 10.1053/j.gastro.2017.08.022.

9. GTSE1 regulates spindle microtubule dynamics to control Aurora B kinase and Kif4A chromokinesin on chromosome arms.
Tipton AR, Wren JD, Daum JR, Siefert JC, Gorbsky GJ. J Cell Biol. 2017 Aug 18. pii: jcb.201610012. doi: 10.1083/jcb.201610012.

10. Evaluating the effect of immune cells on the outcome of patients with mesothelioma.
Chee SJ, Lopez M, Mellows T, Gankande S, Moutasim KA, Harris S, Clarke J, Vijayanand P, Thomas GJ, Ottensmeier CH. Br J Cancer. 2017 Aug 17. doi: 10.1038/bjc.2017.269.

11. Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells.
Sloan SA, Darmanis S, Huber N, Khan TA, Birey F, Caneda C, Reimer R, Quake SR, Barres BA, Pa?ca SP. Neuron. 2017 Aug 16;95(4):779-790.e6. doi: 10.1016/j.neuron.2017.07.035.

12. Zygotic Genome Activation Occurs Shortly After Fertilization in Maize.
Chen J, Strieder N, Krohn NG, Cyprys P, Sprunck S, Engelmann JC, Dresselhaus T. Plant Cell. 2017 Aug 16. pii: tpc.00099.2017. doi: 10.1105/tpc.17.00099.

13. Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria.
Jensen PA, Zhu Z, van Opijnen T. Cell Rep. 2017 Aug 15;20(7):1705-1716. doi: 10.1016/j.celrep.2017.07.062.

14. Therapeutic Antibodies to Ganglioside GD2 Evolved from Highly Selective Germline Antibodies.
Sterner E, Peach ML, Nicklaus MC, Gildersleeve JC. Cell Rep. 2017 Aug 15;20(7):1681-1691. doi: 10.1016/j.celrep.2017.07.050.

15. Stromal R-spondin orchestrates gastric epithelial stem cells and gland homeostasis.
Sigal M, Logan CY, Kapalczynska M, Mollenkopf HJ, Berger H, Wiedenmann B, Nusse R, Amieva MR, Meyer TF. Nature. 2017 Aug 24;548(7668):451-455. doi: 10.1038/nature23642. Epub 2017 Aug 16.

16. Mutations in eIF5B confer thermosensitive and pleiotropic phenotypes via translation defects in Arabidopsis thaliana.
Zhang L, Liu X, Gaikwad K, Kou X, Wang F, Tian X, Xin M, Ni Z, Sun Q, Peng H, Vierling E. Plant Cell. 2017 Aug 14. pii: tpc.00808.2016. doi: 10.1105/tpc.16.00808.

17. Loss of the chromatin modifier Kdm2aa causes BrafV600E-independent spontaneous melanoma in zebrafish.
Scahill CM, Digby Z, Sealy IM, Wojciechowska S, White RJ, Collins JE, Stemple DL, Bartke T, Mathers ME, Patton EE, Busch-Nentwich EM. PLoS Genet. 2017 Aug 14;13(8):e1006959. doi: 10.1371/journal.pgen.1006959. eCollection 2017 Aug.

18. Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression.
Andergassen D, Dotter CP, Wenzel D, Sigl V, Bammer PC, Muckenhuber M, Mayer D, Kulinski TM, Theussl HC, Penninger JM, Bock C, Barlow DP, Pauler FM, Hudson QJ. Elife. 2017 Aug 14;6. pii: e25125. doi: 10.7554/eLife.25125.

19. Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease.
Marigorta UM, Denson LA, Hyams JS, Mondal K, Prince J, Walters TD, Griffiths A, Noe JD, Crandall WV, Rosh JR, Mack DR, Kellermayer R, Heyman MB, Baker SS, Stephens MC, Baldassano RN, Markowitz JF, Kim MO, Dubinsky MC, Cho J, Aronow BJ, Kugathasan S, Gibson G. Nat Genet. 2017 Aug 14. doi: 10.1038/ng.3936.

20. High Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure.
Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem DA, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM. Circulation. 2017 Aug 11. pii: CIRCULATIONAHA.117.029430. doi: 10.1161/CIRCULATIONAHA.117.029430.

21. TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease.
Ulland TK, Song WM, Huang SC, Ulrich JD, Sergushichev A, Beatty WL, Loboda AA, Zhou Y, Cairns NJ, Kambal A, Loginicheva E, Gilfillan S, Cella M, Virgin HW, Unanue ER, Wang Y, Artyomov MN, Holtzman DM, Colonna M. Cell. 2017 Aug 10;170(4):649-663.e13. doi: 10.1016/j.cell.2017.07.023.

22. KLF4 Regulation of Ch25h and LXR Mitigates Atherosclerosis Susceptibility.
Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY. Circulation. 2017 Aug 9. pii: CIRCULATIONAHA.117.027462. doi: 10.1161/CIRCULATIONAHA.117.027462.

23. Flower-specific jasmonate signaling regulates constitutive floral defenses in wild tobacco.
Li R, Wang M, Wang Y, Schuman MC, Weinhold A, Schafer M, Jimenez-Aleman GH, Barthel A, Baldwin IT. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):E7205-E7214. doi: 10.1073/pnas.1703463114. Epub 2017 Aug 7.

24. BMI1 and MEL18 Promote Colitis-Associated Cancer in Mice via REG3B and STAT3.
Liu X, Wei W, Li X, Shen P, Ju D, Wang Z, Zhang R, Yang F, Chen C, Cao K, Zhu G, Chen H, Chen L, Sui J, Zhang E, Wu K, Wang F, Zhao L, Xi R. Gastroenterology. 2017 Aug 2. pii: S0016-5085(17)35976-0. doi: 10.1053/j.gastro.2017.07.044.

25. Histone Methyltransferase G9a is Required for Cardiomyocyte Homeostasis and Hypertrophy.
Papait R, Serio S, Pagiatakis C, Rusconi F, Carullo P, Mazzola M, Salvarani N, Miragoli M, Condorelli G. Circulation. 2017 Aug 4. pii: CIRCULATIONAHA.117.028561. doi: 10.1161/CIRCULATIONAHA.117.028561.

26. SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes.
Davidson NM, Hawkins ADK, Oshlack A. Genome Biol. 2017 Aug 4;18(1):148. doi: 10.1186/s13059-017-1284-1. Erratum in: Genome Biol. 2017 Aug 24;18(1):160.

27. Therapeutic radiation for childhood cancer drives structural aberrations of NF2 in meningiomas.
Agnihotri S, Suppiah S, Tonge PD, Jalali S, Danesh A, Bruce JP, Mamatjan Y, Klironomos G, Gonen L, Au K, Mansouri S, Karimi S, Sahm F, von Deimling A, Taylor MD, Laperriere NJ, Pugh TJ, Aldape KD, Zadeh G. Nat Commun. 2017 Aug 4;8(1):186. doi: 10.1038/s41467-017-00174-7.

28. Non-conventional role of haemoglobin beta in breast malignancy.
Ponzetti M, Capulli M, Angelucci A, Ventura L, Monache SD, Mercurio C, Calgani A, Sanita P, Teti A, Rucci N. Br J Cancer. 2017 Aug 3. doi: 10.1038/bjc.2017.247

29. Cell-Type-Specific Translation Profiling Reveals a Novel Strategy for Treating Fragile X Syndrome.
Thomson SR, Seo SS, Barnes SA, Louros SR, Muscas M, Dando O, Kirby C, Wyllie DJA, Hardingham GE, Kind PC, Osterweil EK. Neuron. 2017 Aug 2;95(3):550-563.e5. doi: 10.1016/j.neuron.2017.07.013.

30. Impact of Alternative Splicing on the Human Proteome.
Liu Y, Gonzalez-Porta M, Santos S, Brazma A, Marioni JC, Aebersold R, Venkitaraman AR, Wickramasinghe VO. Cell Rep. 2017 Aug 1;20(5):1229-1241. doi: 10.1016/j.celrep.2017.07.025.

31. Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation.
Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W. Cell Rep. 2017 Aug 1;20(5):1215-1228. doi: 10.1016/j.celrep.2017.07.009.

32. Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications.
Ebmeier CC, Erickson B, Allen BL, Allen MA, Kim H, Fong N, Jacobsen JR, Liang K, Shilatifard A, Dowell RD, Old WM, Bentley DL, Taatjes DJ. Cell Rep. 2017 Aug 1;20(5):1173-1186. doi: 10.1016/j.celrep.2017.07.021.

33. Enhanced Neuronal Regeneration in the CAST/Ei Mouse Strain Is Linked to Expression of Differentiation Markers after Injury.
Lisi V, Singh B, Giroux M, Guzman E, Painter MW, Cheng YC, Huebner E, Coppola G, Costigan M, Woolf CJ, Kosik KS. Cell Rep. 2017 Aug 1;20(5):1136-1147. doi: 10.1016/j.celrep.2017.07.010.

34. Dynamic transcriptome changes during adipose tissue energy expenditure reveal critical roles for long noncoding RNA regulators.
Bai Z, Chai XR, Yoon MJ, Kim HJ, Lo KA, Zhang ZC, Xu D, Siang DTC, Walet ACE, Xu SH, Chia SY, Chen P, Yang H, Ghosh S, Sun L. PLoS Biol. 2017 Aug 1;15(8):e2002176. doi: 10.1371/journal.pbio.2002176. eCollection 2017 Aug.

35. A neurogenetic model for the study of schizophrenia spectrum disorders: the International 22q11.2 Deletion Syndrome Brain Behavior Consortium.
Gur RE, Bassett AS, McDonald-McGinn DM, Bearden CE, Chow E, Emanuel BS, Owen M, Swillen A, Van den Bree M, Vermeesch J, Vorstman JAS, Warren S, Lehner T, Morrow B. Mol Psychiatry. 2017 Aug 1. doi: 10.1038/mp.2017.161.

36. A Novel Diagnostic Tool for Selecting Patients With Mesenchymal-Type Colon Cancer Reveals Intratumor Subtype Heterogeneity.
Ubink I, Elias SG, Moelans CB, Lacle MM, van Grevenstein WMU, van Diest PJ, Borel Rinkes IHM, Kranenburg O. J Natl Cancer Inst. 2017 Aug 1;109(8). doi: 10.1093/jnci/djw303.

37. Activation of an AKT/FOXM1/STMN1 pathway drives resistance to tyrosine kinase inhibitors in lung cancer.
Li M, Yang J, Zhou W, Ren Y, Wang X, Chen H, Zhang J, Chen J, Sun Y, Cui L, Liu X, Wang L, Wu C. Br J Cancer. 2017 Aug 29. doi: 10.1038/bjc.2017.292.

38. Role for the EWS domain of EWS/FLI in binding GGAA-microsatellites required for Ewing sarcoma anchorage independent growth.
Johnson KM, Mahler NR, Saund RS, Theisen ER, Taslim C, Callender NW, Crow JC, Miller KR, Lessnick SL. Proc Natl Acad Sci U S A. 2017 Aug 28. pii: 201701872. doi: 10.1073/pnas.1701872114.

39. ER stress and distinct outputs of the IRE1α RNase control proliferation and senescence in response to oncogenic Ras.
Blazanin N, Son J, Craig-Lucas AB, John CL, Breech KJ, Podolsky MA, Glick AB. Proc Natl Acad Sci U S A. 2017 Aug 28. pii: 201701757. doi: 10.1073/pnas.1701757114.

1. 혈관신생 지휘하는 전사인자 단백질 발견
2. 암·황반변성 치료 새 전기… 새 혈관 만드는 단백질 찾았다
3. 간암 항암제 내성 극복 방법 찾았다
4. 환경오염과 암 문제 한번에 해결하는 화합물 합성
5. 시냅스서 신경전달물질을 담은 소포체는 어떻게 방출될까
5. 아프리카 하드자 족에겐 있고, 도시인에겐 없는 것은?
7. 멸종동물의 상징, 도도새의 성장 비밀 풀렸다
8. 비타민 과한 섭취, 경우에 따라 ‘독’된다
9. 아들 건강 위협하는 엄마의 저주
10. 목숨 위협하는 전이성 암 환자 500명 유전체 해독했다
11. 몸 속 혈관도 3D 프린터로 찍어낸다
12. 사람에겐 악취? 식물에겐 ‘아로마 테라피’ 된다
13. 시선이 어디로 갈지 유전자는 알고 있다
14. “유전자 편집기술 잘 알수록 유전자 치료 지지”
15. 식물과 두뇌의 성장이 유사하다?
16. 자는 동안에도 학습 가능?...새 기억은 렘 수면때 생성
17. 전염병 모기, ‘왕’ 모기로 잡는다?
18. 2억 5000만 년 전 물고기는 이렇게 생겼다
19. 장내미생물을 활용해 건강하게 살 방법은?
20. 나노패치 붙이자 피부세포가 혈액세포로
21. 수술 도중 마취 깨는 ‘각성 사고’ 원천방지 가능해졌다
22. '가족력 질환' 막는다...인간 배아 돌연변이 교정
23. 발달 장애 비밀 풀 ‘인공 뇌’ 제작 성공
24. 치매, 파킨슨병 등 퇴행성 뇌질환의 새로운 치료기전 발견
25. 부작용 없앤 MRI 조영제 나왔다
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
주요 제품서비스
문의: 02-3141-0791
service@e-biogen.com






(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
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