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제목 (2017-7)RNA-Seq & Microarray 논문 및 바이오뉴스
작성자 ebiogen
작성일자 2017-07-01
조회수 511
안녕하세요? (주)이바이오젠의 RNA-Seq & Microarray 뉴스레터입니다.
(최근 유명저널에 발표된 논문정보와 바이오뉴스 제공)

본격적인 무더위와 장마가 시작 되었습니다. 마른땅에 빗물이 흠뻑 적셔지길 바랍니다.^^

(주)이바이오젠 올림. (Tel. 02-3141-0791, service@e-biogen.com)
[이달의 제품/서비스 행사]

창사 10주년 기념, RNA-Seq & ChIP-Seq 서비스 연간 할인행사!
microRNA-Seq 실험분석 서비스 할인행사!

1. The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells.
Honda S, Kawamura T, Loher P, Morichika K, Rigoutsos I, Kirino Y. Nucleic Acids Res. 2017 Jun 22. doi: 10.1093/nar/gkx537.

2. Insufficient antibody validation challenges oestrogen receptor beta research.
Andersson S, Sundberg M, Pristovsek N, Ibrahim A, Jonsson P, Katona B, Clausson CM, Zieba A, Ramstrom M, Soderberg O, Williams C, Asplund A. Nat Commun. 2017 Jun 15;8:15840. doi: 10.1038/ncomms15840.

3. Rare Copy Number Variants in NRXN1 and CNTN6 Increase Risk for Tourette Syndrome.
Huang AY, Yu D, Davis LK, Sul JH, Tsetsos F, Ramensky V, Zelaya I, Ramos EM, Osiecki L, Chen JA, McGrath LM, Illmann C, Sandor P, Barr CL, Grados M, Singer HS, Nothen MM, Hebebrand J, King RA, Dion Y, Rouleau G, Budman CL, Depienne C, Worbe Y, Hartmann A, Muller-Vahl KR, Stuhrmann M, Aschauer H, Stamenkovic M, Schloegelhofer M, Konstantinidis A, Lyon GJ, McMahon WM, Barta C, Tarnok Z, Nagy P, Batterson JR, Rizzo R, Cath DC, Wolanczyk T, Berlin C, Malaty IA, Okun MS, Woods DW, Rees E, Pato CN, Pato MT, Knowles JA, Posthuma D, Pauls DL, Cox NJ, Neale BM, Freimer NB, Paschou P, Mathews CA, Scharf JM, Coppola G; Tourette Syndrome Association International Consortium for Genetics (TSAICG); Gilles de la Tourette Syndrome GWAS Replication Initiative (GGRI). Neuron. 2017 Jun 21;94(6):1101-1111.e7. doi: 10.1016/j.neuron.2017.06.010.

4. A TRPV1-to-secretagogin regulatory axis controls pancreatic β-cell survival by modulating protein turnover.
Malenczyk K, Girach F, Szodorai E, Storm P, Segerstolpe A, Tortoriello G, Schnell R, Mulder J, Romanov RA, Borok E, Piscitelli F, Di Marzo V, Szabo G, Sandberg R, Kubicek S, Lubec G, Hokfelt T, Wagner L, Groop L, Harkany T. EMBO J. 2017 Jun 21. pii: e201695347. doi: 10.15252/embj.201695347.

5. qSVA framework for RNA quality correction in differential expression analysis.
Jaffe AE, Tao R, Norris AL, Kealhofer M, Nellore A, Shin JH, Kim D, Jia Y, Hyde TM, Kleinman JE, Straub RE, Leek JT, Weinberger DR. Proc Natl Acad Sci U S A. 2017 Jun 20. pii: 201617384. doi: 10.1073/pnas.1617384114.

6. Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues.
Zhang M, Lykke-Andersen S, Zhu B, Xiao W, Hoskins JW, Zhang X, Rost LM, Collins I, Bunt MV, Jia J, Parikh H, Zhang T, Song L, Jermusyk A, Chung CC, Zhu B, Zhou W, Matters GL, Kurtz RC, Yeager M, Jensen TH, Brown KM, Ongen H, Bamlet WR, Murray BA, McCarthy MI, Chanock SJ, Chatterjee N, Wolpin BM, Smith JP, Olson SH, Petersen GM, Shi J, Amundadottir L. Gut. 2017 Jun 20. pii: gutjnl-2016-313146. doi: 10.1136/gutjnl-2016-313146.

7. Synthesis of asymmetrical multiantennary human milk oligosaccharides.
Prudden AR, Liu L, Capicciotti CJ, Wolfert MA, Wang S, Gao Z, Meng L, Moremen KW, Boons GJ. Proc Natl Acad Sci U S A. 2017 Jun 19. pii: 201701785. doi: 10.1073/pnas.1701785114.

8. Integrated genome and transcriptome sequencing identifies a noncoding mutation in the genome replication factor DONSON as the cause of microcephaly-micromelia syndrome.
Evrony GD, Cordero DR, Shen J, Partlow JN, Yu TW, Rodin RE, Hill RS, Coulter ME, Lam AN, Jayaraman D, Gerrelli D, Diaz DG, Santos C, Morrison V, Galli A, Tschulena U, Wiemann S, Martel MJ, Spooner B, Ryu SC, Elhosary PC, Richardson JM, Tierney D, Robinson CA, Chibbar R, Diudea D, Folkerth R, Wiebe S, Barkovich AJ, Mochida GH, Irvine J, Lemire EG, Blakley P, Walsh CA. Genome Res. 2017 Jun 19. doi: 10.1101/gr.219899.116.

9. Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator.
Ajjawi I, Verruto J, Aqui M, Soriaga LB, Coppersmith J, Kwok K, Peach L, Orchard E, Kalb R, Xu W, Carlson TJ, Francis K, Konigsfeld K, Bartalis J, Schultz A, Lambert W, Schwartz AS, Brown R, Moellering ER. Nat Biotechnol. 2017 Jun 19. doi: 10.1038/nbt.3865.

10. The Transcription Factor T-bet Limits Amplification of Type I IFN Transcriptome and Circuitry in T Helper 1 Cells.
Iwata S, Mikami Y, Sun HW, Brooks SR, Jankovic D, Hirahara K, Onodera A, Shih HY, Kawabe T, Jiang K, Nakayama T, Sher A, O'Shea JJ, Davis FP, Kanno Y. Immunity. 2017 Jun 20;46(6):983-991.e4. doi: 10.1016/j.immuni.2017.05.005. Epub 2017 Jun 13.

11. Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.
Zheng C, Zheng L, Yoo JK, Guo H, Zhang Y, Guo X, Kang B, Hu R, Huang JY, Zhang Q, Liu Z, Dong M, Hu X, Ouyang W, Peng J, Zhang Z. Cell. 2017 Jun 15;169(7):1342-1356.e16. doi: 10.1016/j.cell.2017.05.035.

12. Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost.
Bornelov S, Seroussi E, Yosefi S, Pendavis K, Burgess SC, Grabherr M, Friedman-Einat M, Andersson L. Genome Biol. 2017 Jun 14;18(1):112. doi: 10.1186/s13059-017-1231-1.

13. MicroRNAs control mRNA fate by compartmentalization based on 3' UTR length in male germ cells.
Zhang Y, Tang C, Yu T, Zhang R, Zheng H, Yan W. Genome Biol. 2017 Jun 15;18(1):105. doi: 10.1186/s13059-017-1243-x.

14. A Systems Biology Approach Identifies FUT8 as a Driver of Melanoma Metastasis.
Agrawal P, Fontanals-Cirera B, Sokolova E, Jacob S, Vaiana CA, Argibay D, Davalos V, McDermott M, Nayak S, Darvishian F, Castillo M, Ueberheide B, Osman I, Fenyo D, Mahal LK, Hernando E. Cancer Cell. 2017 Jun 12;31(6):804-819.e7. doi: 10.1016/j.ccell.2017.05.007.

15. Selective replication of oncolytic virus M1 results in a bystander killing effect that is potentiated by Smac mimetics.
Cai J, Lin Y, Zhang H, Liang J, Tan Y, Cavenee WK, Yan G. Proc Natl Acad Sci U S A. 2017 Jun 12. pii: 201701002. doi: 10.1073/pnas.1701002114.

16. Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas.
Rolland DCM, Basrur V, Jeon YK, McNeil-Schwalm C, Fermin D, Conlon KP, Zhou Y, Ng SY, Tsou CC, Brown NA, Thomas DG, Bailey NG, Omenn GS, Nesvizhskii AI, Root DE, Weinstock DM, Faryabi RB, Lim MS, Elenitoba-Johnson KSJ. Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):6581-6586. doi: 10.1073/pnas.1701263114. Epub 2017 Jun 12.

17. A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.
Keren-Shaul H, Spinrad A, Weiner A, Matcovitch-Natan O, Dvir-Szternfeld R, Ulland TK, David E, Baruch K, Lara-Astaiso D, Toth B, Itzkovitz S, Colonna M, Schwartz M, Amit I. Cell. 2017 Jun 15;169(7):1276-1290.e17. doi: 10.1016/j.cell.2017.05.018. Epub 2017 Jun 8.

18. KIF15 promotes pancreatic cancer proliferation via the MEK-ERK signalling pathway.
Wang J, Guo X, Xie C, Jiang J. Br J Cancer. 2017 Jun 8. doi: 10.1038/bjc.2017.165.

19. Caspase-8 contributes to angiogenesis and chemotherapy resistance in glioblastoma.
Fianco G, Mongiardi MP, Levi A, De Luca T, Desideri M, Trisciuoglio D, Del Bufalo D, Cina I, Di Benedetto A, Mottolese M, Gentile A, Centonze D, Ferre F, Barila D. Elife. 2017 Jun 8;6. pii: e22593. doi: 10.7554/eLife.22593.

20. Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network.
Longabaugh WJR, Zeng W, Zhang JA, Hosokawa H, Jansen CS, Li L, Romero-Wolf M, Liu P, Kueh HY, Mortazavi A, Rothenberg EV. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5800-5807. doi: 10.1073/pnas.1610617114.

21. The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Gruning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Nucleic Acids Res. 2017 Jun 5. doi: 10.1093/nar/gkx409.

22. Differential analysis of RNA-seq incorporating quantification uncertainty.
Pimentel H, Bray NL, Puente S, Melsted P, Pachter L. Nat Methods. 2017 Jun 5. doi: 10.1038/nmeth.4324.

23. Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions.
Li L, Dong J, Yan L, Yong J, Liu X, Hu Y, Fan X, Wu X, Guo H, Wang X, Zhu X, Li R, Yan J, Wei Y, Zhao Y, Wang W, Ren Y, Yuan P, Yan Z, Hu B, Guo F, Wen L, Tang F, Qiao J. Cell Stem Cell. 2017 Jun 1;20(6):891-892. doi: 10.1016/j.stem.2017.05.009.

24. Genetic-Variation-Driven Gene-Expression Changes Highlight Genes with Important Functions for Kidney Disease.
Ko YA, Yi H, Qiu C, Huang S, Park J, Ledo N, Kottgen A, Li H, Rader DJ, Pack MA, Brown CD, Susztak K. Am J Hum Genet. 2017 Jun 1;100(6):940-953. doi: 10.1016/j.ajhg.2017.05.004.

25. Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome.
Teschendorff AE, Enver T. Nat Commun. 2017 Jun 1;8:15599. doi: 10.1038/ncomms15599.

26. Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants.
Pajoro A, Severing E, Angenent GC, Immink RGH. Genome Biol. 2017 Jun 1;18(1):102. doi: 10.1186/s13059-017-1235-x.

27. ChIP-seq analysis of the LuxR-type regulator VjbR reveals novel insights into the Brucella virulence gene expression network.
Kleinman CL, Sycz G, Bonomi HR, Rodriguez RM, Zorreguieta A, Sieira R. Nucleic Acids Res. 2017 Jun 2;45(10):5757-5769. doi: 10.1093/nar/gkx165.

28. Removing bias against short sequences enables northern blotting to better complement RNA-seq for the study of small RNAs.
Choi YS, Edwards LO, DiBello A, Jose AM. Nucleic Acids Res. 2017 Jun 2;45(10):e87. doi: 10.1093/nar/gkx091.

29. A Critical Analysis of the Role of SNARE Protein SEC22B in Antigen Cross-Presentation.
Wu SJ, Niknafs YS, Kim SH, Oravecz-Wilson K, Zajac C, Toubai T, Sun Y, Prasad J, Peltier D, Fujiwara H, Hedig I, Mathewson ND, Khoriaty R, Ginsburg D, Reddy P. Cell Rep. 2017 Jun 27;19(13):2645-2656. doi: 10.1016/j.celrep.2017.06.013.

30. The doublesex-related Dmrta2 safeguards neural progenitor maintenance involving transcriptional regulation of Hes1.
Young FI, Keruzore M, Nan X, Gennet N, Bellefroid EJ, Li M. Proc Natl Acad Sci U S A. 2017 Jun 27. pii: 201705186. doi: 10.1073/pnas.1705186114.

31. BRIE: transcriptome-wide splicing quantification in single cells.
Huang Y, Sanguinetti G. Genome Biol. 2017 Jun 27;18(1):123. doi: 10.1186/s13059-017-1248-5.

32. Chromosomal Microarray Testing for Children With Unexplained Neurodevelopmental Disorders.
Martin CL, Ledbetter DH. JAMA. 2017 Jun 27;317(24):2545-2546. doi: 10.1001/jama.2017.7272.

33. A Heparan Sulfate Microarray Reveals that Heparan Sulfate-Protein Binding Exhibit Different Ligand Requirements.
Zong C, Venot A, Li X, Lu W, Xiao W, Wilkes JL, Salanga CL, Handel TM, Wang L, Wolfert MA, Boons GJ. J Am Chem Soc. 2017 Jun 26. doi: 10.1021/jacs.7b01399.

1. 암 세포 ‘다리’ 없애 전이 막는다
2. 아무리 잘 관리해도 암에 걸릴 사람은 걸린다?
3. 고산병 치료제로 암세포 찾아가는 근적외선 광역학치료제 개발
4. 면역력 키워 암 고치는 천연물질 국내 연구진이 최초 발견
5. 말기암, 전이암 치료할 새로운 방법 찾았다
6. 항생제 내성 생기는 건 ‘박테리아의 섹스’ 때문
7. 사라져라 흰머리, 자라나라 검은머리
8. 카리브해·브라질 북동부가 지카 바이러스의 거점이었다
9. 갓 태어난 쌍둥인데 키 차이 나는 이유는?
10. 동물실험없이 항암제 독성 시험하는 기술 나왔다
11. 17개국 과학자들, ‘환자 맞춤형 암 치료’ 연구 나선다
12. 물 밖에서, 바늘도 없이, 제브라피쉬의 뇌파 검사 성공!
13. 현생 인류, 10만 년 더 일찍 출현했다
14. 심장이 잘려 나가도 생존하는 제브라피쉬의 비결
15. ‘바코드’로 소변 찍어 전립선암 검사한다
16. 김치 유산균이 비만 막는다
17. 반도체 칩 위에서 빠르게 신약 효능 검사한다
18. 세포 내 물질교환의 비밀, 국내 연구진이 풀었다
19. 산소운반 필수 단백질, 예쁜꼬마선충이 ‘헴’ 농도를 유지하는 방법
20. 여성에게 집중된 불임-피임, 이제 남성의 몸도 연구한다
21. 꼬불꼬불한 미토콘드리아 내막의 비결
22. 언어능력 결정짓는 유전적 요인, 뇌신경세포 밖에도 있다
23. 우리아이, 만성 소화불량 계속되면 파킨슨병 확률 높다?
- 위 기사는 동아사이언스(http://www.dongascience.com/)에서 제공하고 링크클릭시 해당 사이트로 이동하여 기사내용을 보실수 있습니다.
(주)이바이오젠
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service@e-biogen.com






(주)이바이오젠, 서울 영등포구 선유로 13길 25, 에이스하이테크시티2, 305호
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